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.: Databases: DNA and RNA
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.: Tools: Sequence Analysis / Comparisons
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Sequence Analysis / Comparisons


BLAST at NCBI

ClustalW at EMBL - Clustal W is a general purpose multiple sequence alignment program for DNA or proteins.It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

FASTA

Promoter Prediction by Neural Network - Our training and test sets of human and Drosophila melanogaster promoter sequences are available to the community for testing transcription start site predictors. These sites also contain our representative, standardized data sets of human and Drosophila melanogaster genes.

SAM - Sequence Alignment and Modeling System

ToPLign

Multiple Sequence Alignment at HGSC

VSNS - BioComputing Division Multiple Alignment Resource Page. This page was developed for the GNA-VSNS Biocomputing course.

Links to On Line Analysis Tools at ABIM

RefSeq - The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products, for major research organisms.

dBEST - dbEST is a division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or Expressed Sequence Tags, from a number of organisms.

PHRAP - phrap is a program for assembling shotgun DNA sequence data.

SRS - Sequence Retrieval System. Network Browser for Databanks in Molecular Biology

DeCypher - Bioinformatics Supercomputer. The TimeLogic DeCypher system dramatically accelerates computationally intensive bioinformatics algorithms—including BLAST, Smith-Waterman, and HMM analysis. Its amazing calculation speed is achieved through a combination of innovative hardware and software engineering.
 
 
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