ClustalW
at EMBL - Clustal W is a general purpose multiple sequence alignment
program for DNA or proteins.It produces biologically meaningful
multiple sequence alignments of divergent sequences. It calculates
the best match for the selected sequences, and lines them up
so that the identities, similarities and differences can be
seen. Evolutionary relationships can be seen via viewing Cladograms
or Phylograms.
Promoter
Prediction by Neural Network - Our training and test sets
of human and Drosophila melanogaster promoter sequences are
available to the community for testing transcription start site
predictors. These sites also contain our representative, standardized
data sets of human and Drosophila melanogaster genes.
RefSeq
- The Reference Sequence (RefSeq) collection aims to provide
a comprehensive, integrated, non-redundant set of sequences,
including genomic DNA, transcript (RNA), and protein products,
for major research organisms.
dBEST - dbEST
is a division of GenBank that contains sequence data and other
information on "single-pass" cDNA sequences, or Expressed
Sequence Tags, from a number of organisms.
PHRAP - phrap is a program
for assembling shotgun DNA sequence data.
SRS - Sequence Retrieval
System. Network Browser for Databanks in Molecular Biology
DeCypher
- Bioinformatics Supercomputer. The TimeLogic DeCypher system
dramatically accelerates computationally intensive bioinformatics
algorithms—including BLAST, Smith-Waterman, and HMM analysis.
Its amazing calculation speed is achieved through a combination
of innovative hardware and software engineering.
