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| Programas on-line & Softwares |
| Desenho de Primers |
| Primer
Generator - automated generator of primers for site-directed mutagenesis.
Web Primer Operon Technologies - Oligo Analysis & Plotting Tool Primer3 - pick primers from a DNA sequence Consensus Degenerate Hybrid Oligonucleotide Primers - PCR primers designed from protein multiple sequence alignments NetPrimer - Primers are analyzed for melting temperature and all secondary structures. |
| Análise de seqüencias e manipulação |
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REBASE
- The Restriction Enzyme Database |
| Desenho de Plasmídios |
| WebPlasmid
- Programa online para esquematizar e desenhar plasmidios |
| Alinhamento de sequências |
| Guide
to Biosequence Comparison - resumo dos conceitos básicos de alguns
programas populares de comparação de sequencias e com links para estes
programas
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| Estruturas 3D |
| RasMol
Home Page - programas gratuitos para visualizar estruturas moleculares. Chime - plugin do Netscape e IE para visualizar e interagir com com moleculas 3D de DNA e proteinas. VMD - Visual Molecular Dynamics - molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. NAMD - parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Java Molecular Viewer - JMV - several molecular representations, multiple coloring styles, lighting controls, and stereoscopic rendering capabilities. |
| Análise de proteínas |
| Swiss-PdbViewer
- is an application that provides a user friendly interface allowing
to analyze several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare
their active sites or any other relevant parts. Amino acid mutations,
H-bonds, angles and distances between atoms are easy to obtain thanks
to the intuitive graphic and menu interface. Protein Sequence Analysis server - predicts probable secondary structures and folding classes for a given amino acid sequence. TMpred - makes a prediction of membrane-spanning regions and their orientation. TMHMM Server - Prediction of transmembrane helices in proteins |
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